Find Research Outputs

2018

An ecological momentary intervention for smoking cessation: The associations of just-in-time, tailored messages with lapse risk factors

Hébert, E. T., Stevens, E. M., Frank, S. G., Kendzor, D. E., Wetter, D. W., Zvolensky, M. J., Buckner, J. D. & Businelle, M. S. Mar 1 2018 In : Addictive Behaviors. 78, p. 30-35 6 p.

Research output: Research - peer-reviewArticle

Smoking Cessation
Smoking
Tobacco Products
Availability
Smartphone

Descriptive and injunctive norms of waterpipe smoking among college students

Leavens, E. L. S., Brett, E. I., Morgan, T. L., Lopez, S. V., Shaikh, R. A., Leffingwell, T. R. & Wagener, T. L. Feb 1 2018 In : Addictive Behaviors. 77, p. 59-62 4 p.

Research output: Research - peer-reviewArticle

Tobacco
Students
Smoking
Feedback
Population

E-cigarette use among treatment-seeking smokers: Moderation of abstinence by use frequency

Subialka Nowariak, E. N., Lien, R. K., Boyle, R. G., Amato, M. S. & Beebe, L. A. Feb 1 2018 In : Addictive Behaviors. 77, p. 137-142 6 p.

Research output: Research - peer-reviewArticle

Electronic Cigarettes
Tobacco Products
Tobacco
Logistic Models
Population

Expression and purification of human and Saccharomyces cerevisiae equilibrative nucleoside transporters

Boswell-Casteel, R. C., Johnson, J. M., Roe-Žurž, Z., Duggan, K. D., Schmitz, H. & Hays, F. A. Feb 1 2018 In : Protein Expression and Purification. 142, p. 68-74 7 p.

Research output: Research - peer-reviewArticle

Nucleoside Transport Proteins
Saccharomyces cerevisiae
Nucleosides
Detergents
Membranes
2017

3D printed personalized titanium plates improve clinical outcome in microwave ablation of bone tumors around the knee

Ma, L., Zhou, Y., Zhu, Y., Lin, Z., Chen, L., Zhang, Y., Xia, H. & Mao, C. Dec 1 2017 In : Scientific Reports. 7, 1, 7626

Research output: Research - peer-reviewArticle

Microwaves
Titanium
Knee
Bone and Bones
Neoplasms

3D Stacked Construct: A Novel Substitute for Corneal Tissue Engineering

Shrestha, P., Nicholas, S. E. & Karamichos, D. Apr 28 2017 In : Methods in Molecular Biology.

Research output: Research - peer-reviewArticle

Tissue Engineering
Sphingolipids
Corneal Injuries
Cornea
Lipids

Acetazolamide: A New Treatment for Visual Vertigo

Sluch, I. M., Elliott, M. S., Dvorak, J., Ding, K. & Farris, B. K. Jul 31 2017 (Accepted/In press) In : Neuro-Ophthalmology. p. 1-6 6 p.

Research output: Research - peer-reviewArticle

Acetazolamide
Vertigo
Therapeutics
Surveys and Questionnaires
Dizziness
1 Citations

Activin A induces skeletal muscle catabolism via p38β mitogen-activated protein kinases

Ding, H., Zhang, G., Sin, K. W. T., Liu, Z., Lin, R. K., Li, M. & Li, Y. P. Apr 1 2017 In : AMB Express.

Research output: Research - peer-reviewArticle

Mitogen-Activated Protein Kinases
Skeletal Muscle
activin A
Muscles
Skeletal Muscle Fibers
1 Citations

Acute hypoxia influences collagen and matrix metalloproteinase expression by human keratoconus cells in vitro.

McKay, T. B., Hjortdal, J., Shrestha, P. & Karamichos, D. Apr 20 2017 In : PLoS One.

Research output: Research - peer-reviewArticle

Keratoconus
Matrix Metalloproteinases
Collagen
Hypoxia
In Vitro Techniques

Adams–Oliver syndrome review of the literature: Refining the diagnostic phenotype

Hassed, S., Li, S., Mulvihill, J., Aston, C. & Palmer, S. Mar 1 2017 In : American Journal of Medical Genetics, Part A. 173, 3, p. 790-800 11 p.

Research output: Research - peer-reviewReview article

Phenotype
Adams Oliver syndrome
Blood Vessels
Central Nervous System
Nervous System Malformations
1 Citations

Adipose Stromal Cells from Visceral and Subcutaneous Fat Facilitate Migration of Ovarian Cancer Cells via IL-6/JAK2/STAT3 Pathway.

Kim, B., Kim, H. S., Kim, S., Tsang, B. K., Dhanasekaran, D. & Song, Y. H. Apr 1 2017 In : Cancer Research and Treatment. 49, 2, p. 338-349 11 p.

Research output: Research - peer-reviewArticle

Intra-Abdominal Fat
Subcutaneous Fat
Stromal Cells
Ovarian Neoplasms
Interleukin-6

A Dominant Mutation in Rpe65, D477G, Delays Dark Adaptation and Disturbs the Visual Cycle in the Mutant Knock-In Mice

Shin, Y., Moiseyev, G., Chakraborty, D. & Ma, J. X. Mar 1 2017 In : American Journal of Pathology. 187, 3, p. 517-527 11 p.

Research output: Research - peer-reviewArticle

Dark Adaptation
Mutation
Retinaldehyde
Retinitis Pigmentosa
Regeneration
1 Citations

Advancing viral RNA structure prediction: Measuring the thermodynamics of pyrimidine-rich internal loops

Phan, A., Mailey, K., Saeki, J., Gu, X. & Schroeder, S. J. May 1 2017 In : RNA. 23, 5, p. 770-781 12 p.

Research output: Research - peer-reviewArticle

Viral Structures
Viral RNA
Thermodynamics
RNA
pyrimidine
3 Citations

AG311, a small molecule inhibitor of complex I and hypoxia-induced HIF-1α stabilization

Bastian, A., Matsuzaki, S., Humphries, K. M., Pharaoh, G. A., Doshi, A., Zaware, N., Gangjee, A. & Ihnat, M. Mar 1 2017 In : Cancer Letters. p. 149-157 8 p.

Research output: Research - peer-reviewArticle

Neoplasms
Hypoxia
Oxygen Consumption
Mitochondria
Ubiquinone

A HOPS protein, MoVps41, is crucially important for vacuolar morphogenesis, vegetative growth, reproduction and virulence in Magnaporthe oryzae

Zhang, X., Wang, G., Yang, C., Huang, J., Chen, X., Zhou, J., Li, G., Norvienyeku, J. & Wang, Z. Jun 30 2017 In : Frontiers in Plant Science. 8, 1091

Research output: Research - peer-reviewArticle

Magnaporthe oryzae
protein transport
morphogenesis
vegetative growth
virulence

A laparoscopic applicator probe for real-time en-face mapping of near-surface optical sources of heterogeneity over a 1cm instrument-tip-size field-of-view

Piao, D., Bartels, K. E., Holyoak, G. R. & Patel, S. 2017 Molecular-Guided Surgery: Molecules, Devices, and Applications III. SPIE, Vol. 10049, 1004917

Research output: ResearchConference contribution

Applicators
Light sources
Tissue
field of view
probes

Allele-specific expression at the androgen receptor alpha gene in a hybrid unisexual fish, the Amazon molly (Poecilia formosa)

Zhu, F., Schlupp, I. & Tiedemann, R. Oct 1 2017 In : PLoS ONE. 12, 10, e0186411

Research output: Research - peer-reviewArticle

Poecilia
Androgen Receptors
Taiwan
Fishes
Alleles

Altered populations of natural killer cells, cytotoxic T lymphocytes, and regulatory T cells in major depressive disorder: Association with sleep disturbance

Suzuki, H., Savitz, J., Kent Teague, T., Gandhapudi, S. K., Tan, C., Misaki, M., McKinney, B. A., Irwin, M. R., Drevets, W. C. & Bodurka, J. Mar 15 2017 (Accepted/In press) In : Brain, Behavior, and Immunity.

Research output: Research - peer-reviewArticle

Major Depressive Disorder
Cytotoxic T-Lymphocytes
Regulatory T-Lymphocytes
Natural Killer Cells
Sleep

A metabolic switch controls intestinal differentiation downstream of Adenomatous polyposis coli (APC).

Sandoval, I. T., Delacruz, R. G., Miller, B. N., Hill, S., Olson, K. A., Boyd, K., Satterfield, C., Remmen, H. V., Rutter, J. & Jones, D. Apr 11 2017 In : eLife.

Research output: Research - peer-reviewArticle

Adenomatous Polyposis Coli
Metabolism
Switches
Pyruvic Acid
Zebrafish

A method for safely resecting anterior butterfly gliomas: the surgical anatomy of the default mode network and the relevance of its preservation.: The surgical anatomy of the default mode network and the relevance of its preservation

Burks, J. D., Bonney, P. A., Conner, A. K., Glenn, C. A., Briggs, R. G., Battiste, J. D., McCoy, T., O'Donoghue, D. L., Wu, D. H. & Sughrue, M. E. Jun 1 2017 In : Journal of Neurosurgery. 126, 6, p. 1795-1811 17 p.

Research output: Research - peer-reviewArticle

Butterflies
Glioma
Anatomy
Incidence
Akinetic Mutism
3 Citations

A missense variant in NCF1 is associated with susceptibility to multiple autoimmune diseases

Zhao, J. , Ma, J. , Deng, Y. , Kelly, J. A. , Kim, K. , Bang, S. Y. , Lee, H. S. , Li, Q. Z. , Wakeland, E. K. , Qiu, R. , Liu, M. , Guo, J. , Li, Z. , Tan, W. , Rasmussen, A. , Lessard, C. J. , Sivils, K. L. , Hahn, B. H. , Grossman, J. M. , Kamen, D. L. & 5 others Gilkeson, G. S., Bae, S. C., Gaffney, P. M., Shen, N. & Tsao, B. P. Mar 1 2017 In : Nature Genetics. 49, 3, p. 433-437 5 p.

Research output: Research - peer-reviewArticle

Autoimmune Diseases
Odds Ratio
Systemic Lupus Erythematosus
Reactive Oxygen Species
Interferon Type I
1 Citations

Analysis of Preoperative Metabolic Risk Factors Affecting the Prognosis of Patients with Esophageal Squamous Cell Carcinoma: The Fujian Prospective Investigation of Cancer (FIESTA) Study

Peng, F., Hu, D., Lin, X., Chen, G., Liang, B., Zhang, H., Dong, X., Lin, J., Zheng, X. & Niu, W. Feb 1 2017 In : EBioMedicine. 16, p. 115-123 9 p.

Research output: Research - peer-reviewArticle

Neoplasms
Esophageal Squamous Cell Carcinoma
Epithelial Cells
Mortality
Esophageal Neoplasms
1 Citations

Analysis of sphingolipids in human corneal fibroblasts from normal and keratoconus patients

Qi, H., Priyadarsini, S., Nicholas, S. E., Sarker-Nag, A., Allegood, J., Chalfant, C. E., Mandal, N. A. & Karamichos, D. Apr 2017 In : Journal of Lipid Research. 58, 4, p. 636-648 13 p.

Research output: Research - peer-reviewArticle

Sphingolipids
Ceramides
Fibroblasts
Keratoconus
Transforming Growth Factors

An Analysis of 3-Year Outcomes Following Canaloplasty for the Treatment of Open-Angle Glaucoma

Khaimi, M. A., Dvorak, J. D. & Ding, K. 2017 In : Journal of Ophthalmology. 2017, 2904272

Research output: Research - peer-reviewArticle

Open Angle Glaucoma
Glaucoma
Cataract
Sutures
Visual Acuity

An evaluation of progression free survival and overall survival of ovarian cancer patients with clear cell carcinoma versus serous carcinoma treated with platinum therapy: An NRG Oncology/Gynecologic Oncology Group experience

Oliver, K. E., Brady, W. E., Birrer, M., Gershenson, D. M., Fleming, G., Copeland, L. J., Tewari, K., Argenta, P. A., Mannel, R. S., Secord, A. A., Stephan, J. M., Mutch, D. G., Stehman, F. B., Muggia, F. M., Rose, P. G., Armstrong, D. K., Bookman, M. A., Burger, R. A. & Farley, J. H. 2017 (Accepted/In press) In : Gynecologic Oncology.

Research output: Research - peer-reviewArticle

Platinum
Ovarian Neoplasms
Disease-Free Survival
Carcinoma
Survival

A new approach to develop computer-aided diagnosis scheme of breast mass classification using deep learning technology

Qiu, Y., Yan, S., Gundreddy, R. R., Wang, Y., Cheng, S., Liu, H. & Zheng, B. 2017 In : Journal of X-Ray Science and Technology. 25, 5, p. 751-763 13 p.

Research output: Research - peer-reviewArticle

Computer aided diagnosis
Deep learning
Breast
Learning
Technology
4 Citations

A new mouse model of frailty: the Cu/Zn superoxide dismutase knockout mouse

Deepa, S. S., Bhaskaran, S., Espinoza, S., Brooks, S. V., McArdle, A., Jackson, M. J., Van Remmen, H. & Richardson, A. Apr 1 2017 In : GeroScience. 39, 2, p. 187-198 12 p.

Research output: Research - peer-reviewArticle

Knockout Mice
Superoxide Dismutase-1
Sarcopenia
Cell Aging
Geriatrics
5 Citations

A new role for oxidative stress in aging: The accelerated aging phenotype in Sod1−/− mice is correlated to increased cellular senescence

Zhang, Y., Unnikrishnan, A., Deepa, S. S., Liu, Y., Li, Y., Ikeno, Y., Sosnowska, D., Van Remmen, H. & Richardson, A. Apr 1 2017 In : Redox Biology. 11, p. 30-37 8 p.

Research output: Research - peer-reviewArticle

Oxidative stress
Aging of materials
Cell Aging
Oxidative Stress
Phenotype

An extension of Kish's formula for design effects to two- and three-stage designs with stratification

Chen, S. & Rust, K. Jun 1 2017 In : Journal of Survey Statistics and Methodology. 5, 2, p. 111-130 20 p., smw036

Research output: Research - peer-reviewArticle

Design Effect
Stratification
Design
Planning
Clustering
1 Citations

An innovative community-based model for improving preventive care in rural counties

Nagykaldi, Z. J., Scheid, D., Zhao, D., Mishra, B. & Greever-Rice, T. Sep 1 2017 In : Journal of the American Board of Family Medicine. 30, 5, p. 583-591 9 p.

Research output: Research - peer-reviewArticle

Preventive Medicine
Primary Health Care
Registries
Organizations
Health Information Exchange

Annexin-directed β-glucuronidase for the targeted treatment of solid tumors

Guillen, K. P., Ruben, E. A., Virani, N. & Harrison, R. G. Feb 1 2017 In : Protein Engineering, Design and Selection. 30, 2, p. 85-94 10 p.

Research output: Research - peer-reviewArticle

Annexins
Glucuronidase
Neoplasms
Proteins
Therapeutics
2 Citations

An Open-Source Automated Peptide Synthesizer Based on Arduino and Python

Gali, H. Oct 1 2017 In : SLAS Technology. 22, 5, p. 493-499 7 p.

Research output: Research - peer-reviewArticle

Peptides
Boidae
Resins
Washing
Swelling

An Open-Source Automated Peptide Synthesizer Based on Arduino and Python

Gali, H. Jan 1 2017 In : SLAS Technology.

Research output: Research - peer-reviewArticle

Boidae
Peptides
Amino Acids

A novel homozygous VPS45 p.P468L mutation leading to severe congenital neutropenia with myelofibrosis

Shah, R. K., Munson, M., Wierenga, K. J., Pokala, H. R., Newburger, P. E. & Crawford, D. 2017 (Accepted/In press) In : Pediatric Blood and Cancer.

Research output: Research - peer-reviewArticle

Primary Myelofibrosis
Mutation
Neutropenia, Severe Congenital, Autosomal Recessive 3
Membrane Fusion
Extramedullary Hematopoiesis

A novel monoclonal antibody against the von Willebrand Factor A2 domain reduces its cleavage by ADAMTS13

Zhang, L., Su, J., Shen, F., Ma, Z., Zhao, Y., Xia, L. & Ruan, C. Feb 6 2017 In : Journal of Hematology and Oncology. 10, 1, p. 1-4 4 p.

Research output: Research - peer-reviewLetter

von Willebrand Factor
varespladib methyl
Proteolysis
Molecular Weight
Monoclonal Antibodies

A novel nonsense NBEAL2 gene mutation causing severe bleeding in a patient with gray platelet syndrome

Cao, L., Su, J., Li, J., Yu, Z., Bai, X., Wang, Z., Xia, L. & Ruan, C. May 13 2017 (Accepted/In press) In : Platelets. p. 1-4 4 p.

Research output: Research - peer-reviewArticle

Gray Platelet Syndrome
Nonsense Codon
Blood Platelets
Hemorrhage
Mutation

Antibiotic prophylaxis for surgical site infections as a risk factor for infection with Clostridium difficile

Balch, A., Wendelboe, A. M., Vesely, S. K. & Bratzler, D. W. Jun 1 2017 In : PLoS ONE. 12, 6, e0179117

Research output: Research - peer-reviewArticle

Surgical Wound Infection
Antibiotic Prophylaxis
Clostridium difficile
Anti-Bacterial Agents
Infection
1 Citations

Antitumor synergism and enhanced survival with a tumor vasculature–targeted enzyme prodrug system, rapamycin, and cyclophosphamide

Krais, J. J., Virani, N., McKernan, P. H., Nguyen, Q., Fung, K. M., Sikavitsas, V. I., Kurkjian, C. & Harrison, R. G. Sep 1 2017 In : Molecular Cancer Therapeutics. 16, 9, p. 1855-1865 11 p.

Research output: Research - peer-reviewArticle

Prodrugs
Sirolimus
Cyclophosphamide
Survival
Enzymes

Antitumor Synergism and Enhanced Survival with a Tumor Vasculature-Targeted Enzyme Prodrug System, Rapamycin, and Cyclophosphamide.

Krais, J. J., Virani, N., McKernan, P. H., Nguyen, Q., Fung, K-M., Sikavitsas, V., Kurkjian, C. & Harrison, R. May 18 2017 In : Molecular Cancer Therapeutics.

Research output: Research - peer-reviewArticle

Prodrugs
Sirolimus
Cyclophosphamide
Survival
Enzymes

Anxiety and cannabis-related problem severity among dually diagnosed outpatients: The impact of false safety behaviors

Buckner, J. D., Zvolensky, M. J., Ecker, A. H., Jeffries, E. R., Lemke, A. W., Dean, K. E., Businelle, M. S. & Gallagher, M. W. Jul 1 2017 In : Addictive Behaviors. 70, p. 49-53 5 p.

Research output: Research - peer-reviewArticle

Cannabis
Outpatients
Anxiety
Safety
Anxiety Disorders

A PGAM5-KEAP1-Nrf2 complex is required for stress-induced mitochondrial retrograde trafficking

O'Mealey, G. B., Plafker, K. S., Berry, W. L., Janknecht, R., Chan, J. Y. & Plafker, S. M. 2017 In : Journal of Cell Science. 130, 20, p. 3467-3480 14 p.

Research output: Research - peer-reviewArticle

Proteasome Endopeptidase Complex
Transcription Factors
Cullin Proteins
Ubiquitin-Protein Ligases
GTP Phosphohydrolases
1 Citations

A pharmacokinetic/pharmacodynamic model of ACE inhibition of the renin-angiotensin system for normal and impaired renal function

Ford Versypt, A. N., Harrell, G. K. & McPeak, A. N. Sep 2 2017 In : Computers and Chemical Engineering. 104, p. 311-322 12 p.

Research output: Research - peer-reviewArticle

Pharmacodynamics
Enzyme inhibition
Pharmacokinetics
Angiotensins
Peptidyl-Dipeptidase A

A phase I pharmacokinetic study of intraperitoneal bortezomib and carboplatin in patients with persistent or recurrent ovarian cancer: An NRG Oncology/Gynecologic Oncology Group study

Jandial, D. A., Brady, W. E., Howell, S. B., Lankes, H. A., Schilder, R. J., Beumer, J. H., Christner, S. M., Strychor, S., Powell, M. A., Hagemann, A. R., Moore, K. N., Walker, J. L., DiSilvestro, P. A., Duska, L. R., Fracasso, P. M. & Dizon, D. S. May 1 2017 In : Gynecologic Oncology.

Research output: Research - peer-reviewArticle

Carboplatin
Ovarian Neoplasms
Pharmacokinetics
Bortezomib
Area Under Curve

A phase I trial of intraperitoneal GEN-1, an IL-12 plasmid formulated with PEG-PEI-cholesterol lipopolymer, administered with pegylated liposomal doxorubicin in patients with recurrent or persistent epithelial ovarian, fallopian tube or primary peritoneal cancers: An NRG Oncology/Gynecologic Oncology Group study

Thaker, P. H., Brady, W. E., Lankes, H. A., Odunsi, K., Bradley, W. H., Moore, K. N., Muller, C. Y., Anwer, K., Schilder, R. J., Alvarez, R. D. & Fracasso, P. M. 2017 (Accepted/In press) In : Gynecologic Oncology.

Research output: Research - peer-reviewArticle

Fallopian Tubes
Interleukin-12
Plasmids
Cholesterol
Neoplasms
3 Citations

A phase I trial of paclitaxel, cisplatin, and veliparib in the treatment of persistent or recurrent carcinoma of the cervix: An NRG Oncology Study (NCT#01281852)

Thaker, P. H., Salani, R., Brady, W. E., Lankes, H. A., Cohn, D. E., Mutch, D. G., Mannel, R. S., Bell-McGuinn, K. M., Di Silvestro, P. A., Jelovac, D., Carter, J. S., Duan, W., Resnick, K. E., Dizon, D. S., Aghajanian, C. & Fracasso, P. M. 2017 In : Annals of Oncology. 28, 3, p. 505-511 7 p.

Research output: Research - peer-reviewArticle

Cervix Uteri
Carcinoma
Therapeutics
TP protocol
veliparib

Applying a deep learning based CAD scheme to segment and quantify visceral and subcutaneous fat areas from CT images

Wang, Y., Qiu, Y., Thai, T., Moore, K., Liu, H. & Zheng, B. 2017 Medical Imaging 2017: Computer-Aided Diagnosis. SPIE, Vol. 10134, 101343G

Research output: ResearchConference contribution

Intra-Abdominal Fat
Subcutaneous Fat
Learning
Oils and fats
Deep learning

Applying a new bilateral mammographic density segmentation method to improve accuracy of breast cancer risk prediction

Yan, S., Wang, Y., Aghaei, F., Qiu, Y. & Zheng, B. Jul 19 2017 (Accepted/In press) In : International Journal of Computer Assisted Radiology and Surgery. p. 1-10 10 p.

Research output: Research - peer-reviewArticle

Breast Neoplasms
Breast Density
Breast
Mammography
ROC Curve
Ovarian Neoplasms
Tomography
Drug Therapy
Therapeutics
ROC Curve

Apply radiomics approach for early stage prognostic evaluation of ovarian cancer patients: A preliminary study

Danala, G., Wang, Y., Thai, T., Gunderson, C., Moxley, K., Moore, K., Mannel, R., Liu, H., Zheng, B. & Qiu, Y. 2017 Medical Imaging 2017: Computer-Aided Diagnosis. SPIE, Vol. 10134, 1013449

Research output: ResearchConference contribution

tumors
cancer
evaluation
Ovarian Neoplasms
Neoplasms